Fungal OTU Table and Taxonomic Assignments Generated via SEED2

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00027006%3A_____%2F25%3A10178119" target="_blank" >RIV/00027006:_____/25:10178119 - isvavai.cz</a>
Result on the web
<a href="https://doi.org/10.5281/zenodo.15736295" target="_blank" >https://doi.org/10.5281/zenodo.15736295</a>
DOI - Digital Object Identifier
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Result language
angličtina
Original language name
Fungal OTU Table and Taxonomic Assignments Generated via SEED2
Original language description
This dataset contains original bioinformatically processed data from fungal sequencing library using the SEED2 (v2.0.4) pipeline (Větrovský et al., 2018). The data were processed as described in Řezáčová et al. (2019) and Řezáč et al. (2021, 2025). Paired-end reads were assembled, low-quality sequences and reads shorter than 250 bp were removed, and the target regions were extracted. The sequences were then clustered into Operational Taxonomic Units (OTUs) at a 97% similarity threshold. Chimera detection was performed using USEARCH 8.1.1861. A representative sequence (most abundant in the cluster) was selected for each OTU and taxonomically assigned using BLASTn (v2.5.0+) against curated fungal reference databases.
Czech name
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Czech description
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Type
S<sub>db</sub> - Public specialised database
CEP classification
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OECD FORD branch
40106 - Agronomy, plant breeding and plant protection; (Agricultural biotechnology to be 4.4)

Project
<a href="/en/project/QK21010308" target="_blank" >QK21010308: Efficient intercrop cultivation systems using the principles of biotic intensification</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year
2025
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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