ANALYSIS OF MAIN OTU PICKING METHODS BY BIPARTITE GRAPHS
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F17%3APU123502" target="_blank" >RIV/00216305:26220/17:PU123502 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
čeština
Original language name
ANALYSIS OF MAIN OTU PICKING METHODS BY BIPARTITE GRAPHS
Original language description
Studies of ecosystems containing millions of microbial organisms, so called microbiomes, using DNA sequencing became very popular. The main step involves fast clustering of sequences belonging to the same operational taxonomic units (OTU) that represent the same or taxo-nomically related organisms. This step, known as OTU picking, can be performed by several tech-niques and significantly affects the final interpretation of the data. In this paper, a novel R/Biconductor package for microbiome data presentation using bipartite graphs is introduced while its benefits are demonstrated during comparison of 3 OTU picking techniques.
Czech name
ANALYSIS OF MAIN OTU PICKING METHODS BY BIPARTITE GRAPHS
Czech description
Studies of ecosystems containing millions of microbial organisms, so called microbiomes, using DNA sequencing became very popular. The main step involves fast clustering of sequences belonging to the same operational taxonomic units (OTU) that represent the same or taxo-nomically related organisms. This step, known as OTU picking, can be performed by several tech-niques and significantly affects the final interpretation of the data. In this paper, a novel R/Biconductor package for microbiome data presentation using bipartite graphs is introduced while its benefits are demonstrated during comparison of 3 OTU picking techniques.
Classification
Type
D - Article in proceedings
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
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Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2017
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Proceedings of the 23rd Conference STUDENT EEICT 2017
ISBN
978-80-214-5496-5
ISSN
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e-ISSN
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Number of pages
3
Pages from-to
152-154
Publisher name
Neuveden
Place of publication
Neuveden
Event location
Brno
Event date
Apr 27, 2017
Type of event by nationality
CST - Celostátní akce
UT code for WoS article
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