Relationship of Bacteria Using Comparison of Whole Genome Sequences in Frequency Domain
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00159816%3A_____%2F14%3A00063518" target="_blank" >RIV/00159816:_____/14:00063518 - isvavai.cz</a>
Alternative codes found
RIV/00216305:26220/14:PU109324
Result on the web
<a href="http://dx.doi.org/10.1007/978-3-319-06593-9" target="_blank" >http://dx.doi.org/10.1007/978-3-319-06593-9</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-3-319-06593-9" target="_blank" >10.1007/978-3-319-06593-9</a>
Alternative languages
Result language
angličtina
Original language name
Relationship of Bacteria Using Comparison of Whole Genome Sequences in Frequency Domain
Original language description
Developing sequencing techniques provide understanding the molecular phylogeny at the whole genome level. The phylogeny derived from 16S rRNA gene is the universally accepted DNA sequence-based method today; so far there is no widely accepted approach toinfer phylogenetic relationships from complete genome data. If the entire genome is used, the data reflect organismal evolution, not the evolution on a single gene level. We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level - 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Advances in Intelligent Systems and Computing
ISSN
2194-5357
e-ISSN
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Volume of the periodical
283
Issue of the periodical within the volume
2014
Country of publishing house
DE - GERMANY
Number of pages
12
Pages from-to
397-408
UT code for WoS article
000352133800036
EID of the result in the Scopus database
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