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Relationship of Bacteria Using Comparison of Whole Genome Sequences in Frequency Domain

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00159816%3A_____%2F14%3A00063518" target="_blank" >RIV/00159816:_____/14:00063518 - isvavai.cz</a>

  • Alternative codes found

    RIV/00216305:26220/14:PU109324

  • Result on the web

    <a href="http://dx.doi.org/10.1007/978-3-319-06593-9" target="_blank" >http://dx.doi.org/10.1007/978-3-319-06593-9</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1007/978-3-319-06593-9" target="_blank" >10.1007/978-3-319-06593-9</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Relationship of Bacteria Using Comparison of Whole Genome Sequences in Frequency Domain

  • Original language description

    Developing sequencing techniques provide understanding the molecular phylogeny at the whole genome level. The phylogeny derived from 16S rRNA gene is the universally accepted DNA sequence-based method today; so far there is no widely accepted approach toinfer phylogenetic relationships from complete genome data. If the entire genome is used, the data reflect organismal evolution, not the evolution on a single gene level. We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level - 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    EB - Genetics and molecular biology

  • OECD FORD branch

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Others

  • Publication year

    2014

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Advances in Intelligent Systems and Computing

  • ISSN

    2194-5357

  • e-ISSN

  • Volume of the periodical

    283

  • Issue of the periodical within the volume

    2014

  • Country of publishing house

    DE - GERMANY

  • Number of pages

    12

  • Pages from-to

    397-408

  • UT code for WoS article

    000352133800036

  • EID of the result in the Scopus database