ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00159816%3A_____%2F24%3A00079726" target="_blank" >RIV/00159816:_____/24:00079726 - isvavai.cz</a>
Alternative codes found
RIV/00216224:14310/24:00135278 RIV/61989592:15310/24:73620930
Result on the web
<a href="https://academic.oup.com/nar/article/52/D1/D413/7416806" target="_blank" >https://academic.oup.com/nar/article/52/D1/D413/7416806</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/nar/gkad1012" target="_blank" >10.1093/nar/gkad1012</a>
Alternative languages
Result language
angličtina
Original language name
ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era
Original language description
ChannelsDB 2.0 is an updated database providing structural information about the position, geometry and physicochemical properties of protein channels-tunnels and pores-within deposited biomacromolecular structures from PDB and AlphaFoldDB databases. The newly deposited information originated from several sources. Firstly, we included data calculated using a popular CAVER tool to complement the data obtained using original MOLE tool for detection and analysis of protein tunnels and pores. Secondly, we added tunnels starting from cofactors within the AlphaFill database to enlarge the scope of the database to protein models based on Uniprot. This has enlarged available channel annotations similar to 4.6 times as of 1 September 2023. The database stores information about geometrical features, e.g. length and radius, and physico-chemical properties based on channel-lining amino acids. The stored data are interlinked with the available UniProt mutation annotation data. ChannelsDB 2.0 provides an excellent resource for deep analysis of the role of biomacromolecular tunnels and pores. The database is available free of charge: https:////channelsdb2.biodata.ceitec.cz. Graphical Abstract
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10608 - Biochemistry and molecular biology
Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
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Others
Publication year
2024
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Nucleic Acids Research
ISSN
0305-1048
e-ISSN
1362-4962
Volume of the periodical
52
Issue of the periodical within the volume
D1
Country of publishing house
US - UNITED STATES
Number of pages
6
Pages from-to
"D413"-"D418"
UT code for WoS article
001101754200001
EID of the result in the Scopus database
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