ChannelsDB: database of biomacromolecular tunnels and pores
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61989592%3A15310%2F18%3A73591496" target="_blank" >RIV/61989592:15310/18:73591496 - isvavai.cz</a>
Alternative codes found
RIV/00216224:14740/18:00102052
Result on the web
<a href="https://academic.oup.com/nar/article/46/D1/D399/4316099" target="_blank" >https://academic.oup.com/nar/article/46/D1/D399/4316099</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/nar/gkx868" target="_blank" >10.1093/nar/gkx868</a>
Alternative languages
Result language
angličtina
Original language name
ChannelsDB: database of biomacromolecular tunnels and pores
Original language description
ChannelsDB (http://ncbr.muni.cz/ChannelsDB) is a database providing information about the positions, geometry and physicochemical properties of channels (pores and tunnels) found within biomacromolecular structures deposited in the Protein Data Bank. Channels were deposited from two sources; from literature using manual deposition and from a software tool automatically detecting tunnels leading to the enzymatic active sites and selected cofactors, and transmembrane pores. The database stores information about geometrical features (e.g. length and radius profile along a channel) and physicochemical properties involving polarity, hydrophobicity, hydropathy, charge and mutability. The stored data are interlinked with available UniProt annotation data mapping known mutation effects to channel-lining residues. All structures with channels are displayed in a clear interactive manner, further facilitating data manipulation and interpretation. As such, ChannelsDB provides an invaluable resource for research related to deciphering the biological function of biomacromolecular channels.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10403 - Physical chemistry
Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2018
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
NUCLEIC ACIDS RESEARCH
ISSN
0305-1048
e-ISSN
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Volume of the periodical
46
Issue of the periodical within the volume
D1
Country of publishing house
GB - UNITED KINGDOM
Number of pages
7
Pages from-to
"D399"-"D405"
UT code for WoS article
000419550700061
EID of the result in the Scopus database
2-s2.0-85040936131