Protein Sequences Identification using NM-tree

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11320%2F11%3A10099582" target="_blank" >RIV/00216208:11320/11:10099582 - isvavai.cz</a>
Result on the web
<a href="http://dl.acm.org/citation.cfm?id=1995440" target="_blank" >http://dl.acm.org/citation.cfm?id=1995440</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1145/1995412.1995440" target="_blank" >10.1145/1995412.1995440</a>

Result language
angličtina
Original language name
Protein Sequences Identification using NM-tree
Original language description
We have generalized a method for tandem mass spectra interpretation, based on the parameterized Hausdorff distance. Instead of just peptides (short pieces of proteins), in this paper we describe the interpretation of whole protein sequences. For this purpose, we employ the recently introduced NM-tree to index the database of hypothetical mass spectra for exact or fast approximate search. The NM-tree combines the M-tree with the TriGen algorithm in a way that allows to dynamically control the retrieval precision at query time. A scheme for protein sequences identification using the NM-tree is proposed.
Czech name
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Czech description
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Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Publication year
2011
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Article name in the collection
Fourth International Conference on Similarity Search and Applications 2011
ISBN
978-1-4503-0795-6
ISSN
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e-ISSN
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Number of pages
2
Pages from-to
125-126
Publisher name
ACM
Place of publication
New York, USA
Event location
Lipari, Italy
Event date
Jun 30, 2011
Type of event by nationality
EUR - Evropská akce
UT code for WoS article
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