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SimTandem: Similarity Search in Tandem Mass Spectra

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11320%2F12%3A10124005" target="_blank" >RIV/00216208:11320/12:10124005 - isvavai.cz</a>

  • Result on the web

    <a href="http://dx.doi.org/10.1007/978-3-642-32153-5_18" target="_blank" >http://dx.doi.org/10.1007/978-3-642-32153-5_18</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1007/978-3-642-32153-5_18" target="_blank" >10.1007/978-3-642-32153-5_18</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    SimTandem: Similarity Search in Tandem Mass Spectra

  • Original language description

    SimTandem is a tool for fast identification of protein and peptide sequences from tandem mass spectra. The identification is based on similarity search of spectra captured by a tandem mass spectrometer in databases of theoretical mass spectra generated from databases of known protein sequences. Since the number of protein sequences in the databases grows rapidly and a sequential scan over the entire database of spectra is time-consuming, the non-metric access methods are employed as the database indexing techniques. SimTandem is based on a previously proposed method and is freely available at http://www.simtandem.org or http://www.siret.cz/simtandem.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    IN - Informatics

  • OECD FORD branch

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2012

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Lecture Notes in Computer Science

  • ISSN

    0302-9743

  • e-ISSN

  • Volume of the periodical

    2012

  • Issue of the periodical within the volume

    7404

  • Country of publishing house

    DE - GERMANY

  • Number of pages

    2

  • Pages from-to

    242-243

  • UT code for WoS article

  • EID of the result in the Scopus database