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Genome assembly and annotation for red clover (Trifolium pratense; Fabaceae)

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14310%2F14%3A00073251" target="_blank" >RIV/00216224:14310/14:00073251 - isvavai.cz</a>

  • Result on the web

    <a href="http://dx.doi.org/10.3732/ajb.1300340" target="_blank" >http://dx.doi.org/10.3732/ajb.1300340</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.3732/ajb.1300340" target="_blank" >10.3732/ajb.1300340</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Genome assembly and annotation for red clover (Trifolium pratense; Fabaceae)

  • Original language description

    Red clover (Trifolium pratense ) is an important forage plant from the legume family with great importace in agronomy and livestock nourishment. Nevertheless, assembling its medium-sized genome presents a challenge, given current hardware and software possibilities. Next-generation sequencing technologies enable us to generate large amounts of sequence data at low cost. In this study, the genome assembly and red clover genome features are presented. First, assembly software was assessed using data setsfrom a closely related species to find the best possible combination of assembler plus error correction program to assemble the red clover genome. The newly sequenced genome was characterized by repetitive content, number of protein-coding and nonprotein-coding genes, and gene families and functions. Genome features were also compared with those of other sequenced plant species. Abyss with Echo correction was used for de novo assembly of the red clover genome. The presented assembly comp

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    EB - Genetics and molecular biology

  • OECD FORD branch

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2014

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    American Journal of Botany

  • ISSN

    0002-9122

  • e-ISSN

  • Volume of the periodical

    101

  • Issue of the periodical within the volume

    2

  • Country of publishing house

    US - UNITED STATES

  • Number of pages

    11

  • Pages from-to

    327-337

  • UT code for WoS article

    000340451700010

  • EID of the result in the Scopus database