Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14310%2F14%3A00073258" target="_blank" >RIV/00216224:14310/14:00073258 - isvavai.cz</a>
Result on the web
—
DOI - Digital Object Identifier
—

Result language
angličtina
Original language name
Next-generation sequencing and genome characterization of red clover and its wild relative zig-zag clover
Original language description
The genus Trifolium is classified taxonomically into the agronomically outstanding Fabaceae family. It comprises species known as clovers, both wild and cultivated. Recently, interspecific hybridization of tetraploid red clover with related wild octoploid zig-zag clover (T. medium) has been used for the introgression of useful traits into red clover. De novo assembly of the T. pratense genome after Illumina sequencing was achieved. The current assembly comprises ~314.6 Mbp of draft nucleotide sequence.Overall, 47398 protein coding genes were annotated from 64761 predicted genes. Resistance genes, genes for leghemoglobins and nodule-specific cystein-rich peptides were identified. Sequencing data of T. medium were obtained with average genome coverage 20.7x (x = 3.5 Gbp). Species-specific SNP calling for coding sequences was performed and over 924837 SNPs between parental genotypes used for hybridization were discovered. Species-specific DNA markers for T. pratense (23299) and T.
Czech name
—
Czech description
—

Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Article name in the collection
International Conference on ENHANCED GENEPOOL UTILIZATION - Capturing wild relative and landrace diversity for crop improvement, Cambridge, United Kingdom, 16-20 June 2014. Book of Abstracts.
ISBN
9789290439950
ISSN
—
e-ISSN
—
Number of pages
2
Pages from-to
91-92
Publisher name
Bioversity International, Rome, Italy
Place of publication
United Kingdom
Event location
Cambridge, UK
Event date
Jan 1, 2014
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
—

Similar results(10)