gcType: a high-quality type strain genome database for microbial phylogenetic and functional research
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14310%2F21%3A00120904" target="_blank" >RIV/00216224:14310/21:00120904 - isvavai.cz</a>
Result on the web
<a href="https://doi.org/10.1093/nar/gkaa957" target="_blank" >https://doi.org/10.1093/nar/gkaa957</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/nar/gkaa957" target="_blank" >10.1093/nar/gkaa957</a>
Alternative languages
Result language
angličtina
Original language name
gcType: a high-quality type strain genome database for microbial phylogenetic and functional research
Original language description
Taxonomic and functional research of microorganisms has increasingly relied upon genome-based data and methods. As the depository of the Global Catalogue of Microorganisms (GCM) 10K prokaryotic type strain sequencing project, Global Catalogue of Type Strain (gcType) has published 1049 type strain genomes sequenced by the GCM 10K project which are preserved in global culture collections with a valid published status. Additionally, the information provided through gcType includes >12 000 publicly available type strain genome sequences from GenBank incorporated using quality control criteria and standard data annotation pipelines to form a high-quality reference database. This database integrates type strain sequences with their phenotypic information to facilitate phenotypic and genotypic analyses. Multiple formats of cross-genome searches and interactive interfaces have allowed extensive exploration of the database's resources. In this study, we describe web-based data analysis pipelines for genomic analyses and genome-based taxonomy, which could serve as a one-stop platform for the identification of prokaryotic species. The number of type strain genomes that are published will continue to increase as the GCM 10K project increases its collaboration with culture collections worldwide. Data of this project is shared with the International Nucleotide Sequence Database Collaboration. Access to gcType is free at http://gctype.wdcm.org/.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10606 - Microbiology
Result continuities
Project
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Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2021
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Nucleic Acids Research
ISSN
0305-1048
e-ISSN
1362-4962
Volume of the periodical
49
Issue of the periodical within the volume
D1
Country of publishing house
GB - UNITED KINGDOM
Number of pages
12
Pages from-to
„D694“-„D705“
UT code for WoS article
000608437800088
EID of the result in the Scopus database
2-s2.0-85099427294