Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F11%3A00052527" target="_blank" >RIV/00216224:14330/11:00052527 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Result language
angličtina
Original language name
Tool for Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy
Original language description
In the field of fluorescence microscopy image analysis, motion tracking and segmentation algorithms are indispensable tools for tracking cells and for time-resolved analysis of cell characteristics or events. Although there are many such algorithms in everyday use, most of them are not properly validated. We see the ground truth (GT) information as a very important tool for the verification of image processing algorithms. Unfortunately, it is not readily available. Many algorithms in this field of studyare, therefore, validated only against GT consisting of real data manually annotated by a human expert. This annotation is, however, a very difficult, cumbersome, and time consuming task, especially, when single 3D image or even 3D image sequence is considered. We present a novel simulation tool that is capable of generating fully synthetic fluorescence microscopy 3D image data accompanied with GT. The generated data can be either static images or time-lapse sequences.
Czech name
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Czech description
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Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>Z - Vyzkumny zamer (s odkazem do CEZ)<br>S - Specificky vyzkum na vysokych skolach

Publication year
2011
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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