Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F13%3A00069322" target="_blank" >RIV/00216224:14330/13:00069322 - isvavai.cz</a>

Result on the web

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DOI - Digital Object Identifier

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Result language

angličtina

Original language name

Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules

Original language description

We present a novel geometry-based method for computing asymmetric tunnels and voids in proteins, approximating their real shape with selected precision. Our method combines ideas from Voronoi and grid based approaches for protein analysis. We represent tunnels in protein using voxel data grid which allows us to store their shape more accurately. Our algorithm employs a tunnel skeleton computed using Voronoi diagram. The skeleton allows us to perform grid computation in a bounded space, with lower time and memory demands, and easily identify and measure individual tunnels.

Czech name

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Czech description

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Type

D - Article in proceedings

CEP classification

IN - Informatics

OECD FORD branch

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Project

<a href="/en/project/LG13010" target="_blank" >LG13010: Czech Republic representation in the European Research Consortium for Informatics and Mathematics (ERCIM)</a><br>

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Publication year

2013

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Article name in the collection

TPCG 2013

ISBN

9783905673982

ISSN

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e-ISSN

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Number of pages

8

Pages from-to

17-24

Publisher name

Eurographics Association

Place of publication

Germany

Event location

Bath, Great Britain

Event date

Sep 5, 2013

Type of event by nationality

WRD - Celosvětová akce

UT code for WoS article

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