Compact Representation of Photosynthesis Dynamics by Rule-based Models
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F15%3A00083221" target="_blank" >RIV/00216224:14330/15:00083221 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1016/j.entcs.2015.06.008" target="_blank" >http://dx.doi.org/10.1016/j.entcs.2015.06.008</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/j.entcs.2015.06.008" target="_blank" >10.1016/j.entcs.2015.06.008</a>
Alternative languages
Result language
angličtina
Original language name
Compact Representation of Photosynthesis Dynamics by Rule-based Models
Original language description
Traditional mathematical models of photosynthesis are based on mass action kinetics of light reactions. This approach requires the modeller to enumerate all the possible state combinations of the modelled chemical species. This leads to combinatorial explosion in the number of reactions although the structure of the model could be expressed more compactly. We explore the use of rule-based modelling, in particular, a simplified variant of Kappa, to compactly capture and automatically reduce existing mathematical models of photosynthesis. Finally, the reduction procedure is implemented in BioNetGen language and demonstrated on several ODE models of photosynthesis processes.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/EE2.3.20.0256" target="_blank" >EE2.3.20.0256: Local team and international consortium for computational modelling of a cyanobacterial cell</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach
Others
Publication year
2015
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
5th International Workshop on Static Analysis and Systems Biology (SASB 2014)
ISBN
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ISSN
1571-0661
e-ISSN
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Number of pages
11
Pages from-to
17-27
Publisher name
Elsevier
Place of publication
Neuveden
Event location
Mnichov
Event date
Jan 1, 2014
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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