pqsfinder: identification of potential quadruplex forming sequences
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F17%3A00094706" target="_blank" >RIV/00216224:14330/17:00094706 - isvavai.cz</a>
Result on the web
<a href="http://bioconductor.org/packages/release/bioc/html/pqsfinder.html" target="_blank" >http://bioconductor.org/packages/release/bioc/html/pqsfinder.html</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.18129/B9.bioc.pqsfinder" target="_blank" >10.18129/B9.bioc.pqsfinder</a>
Alternative languages
Result language
angličtina
Original language name
pqsfinder: identification of potential quadruplex forming sequences
Original language description
The main functionality of the this package is to detect DNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, this package is able to detect sequences responsible for G4s folded from imperfect G-runs containing bulges or mismatches and as such is more sensitive than competing algorithms.
Czech name
—
Czech description
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Classification
Type
R - Software
CEP classification
—
OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
<a href="/en/project/GA15-02891S" target="_blank" >GA15-02891S: Plant transposable elements and DNA conformation</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2017
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Internal product ID
pqsfinder
Technical parameters
Součást prostředí R-Bioconductor
Economical parameters
neznámé
Owner IČO
00216305
Owner name
VUT Brno