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NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14740%2F16%3A00091249" target="_blank" >RIV/00216224:14740/16:00091249 - isvavai.cz</a>

  • Result on the web

    <a href="http://jcheminf.springeropen.com/articles/10.1186/s13321-016-0171-1" target="_blank" >http://jcheminf.springeropen.com/articles/10.1186/s13321-016-0171-1</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1186/s13321-016-0171-1" target="_blank" >10.1186/s13321-016-0171-1</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges

  • Original language description

    Background The concept of partial atomic charges was first applied in physical and organic chemistry and was later also adopted in computational chemistry, bioinformatics and chemoinformatics. The electronegativity equalization method (EEM) is the most frequently used approach for calculating partial atomic charges. EEM is fast and its accuracy is comparable to the quantum mechanical charge calculation method for which it was parameterized. Several EEM parameter sets for various types of molecules and QM charge calculation approaches have been published and new ones are still needed and produced. Methodologies for EEM parameterization have been described in a few articles, but a software tool for EEM parameterization and EEM parameter sets validation has not been available until now. Results We provide the software tool NEEMP (http://ncbr.muni.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    CF - Physical chemistry and theoretical chemistry

  • OECD FORD branch

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2016

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Journal of Cheminformatics

  • ISSN

    1758-2946

  • e-ISSN

  • Volume of the periodical

    8

  • Issue of the periodical within the volume

    October

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    14

  • Pages from-to

  • UT code for WoS article

    000385466000002

  • EID of the result in the Scopus database