All

What are you looking for?

All
Projects
Results
Organizations

Quick search

  • Projects supported by TA ČR
  • Excellent projects
  • Projects with the highest public support
  • Current projects

Smart search

  • That is how I find a specific +word
  • That is how I leave the -word out of the results
  • “That is how I can find the whole phrase”

De novo design of a non-local beta-sheet protein with high stability and accuracy

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14740%2F18%3A00104596" target="_blank" >RIV/00216224:14740/18:00104596 - isvavai.cz</a>

  • Result on the web

    <a href="http://dx.doi.org/10.1038/s41594-018-0141-6" target="_blank" >http://dx.doi.org/10.1038/s41594-018-0141-6</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1038/s41594-018-0141-6" target="_blank" >10.1038/s41594-018-0141-6</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    De novo design of a non-local beta-sheet protein with high stability and accuracy

  • Original language description

    beta-sheet proteins carry out critical functions in biology, and hence are attractive scaffolds for computational protein design. Despite this potential, de novo design of all-beta-sheet proteins from first principles lags far behind the design of all-alpha or mixed-alpha beta domains owing to their non-local nature and the tendency of exposed beta-strand edges to aggregate. Through study of loops connecting unpaired beta-strands (beta-arches), we have identified a series of structural relationships between loop geometry, side chain directionality and beta-strand length that arise from hydrogen bonding and packing constraints on regular beta-sheet structures. We use these rules to de novo design jellyroll structures with double-stranded beta-helices formed by eight antiparallel beta-strands. The nuclear magnetic resonance structure of a hyperthermostable design closely matched the computational model, demonstrating accurate control over the beta-sheet structure and loop geometry. Our results open the door to the design of a broad range of non-local beta-sheet protein structures.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    10608 - Biochemistry and molecular biology

Result continuities

  • Project

    <a href="/en/project/LQ1601" target="_blank" >LQ1601: CEITEC 2020</a><br>

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Others

  • Publication year

    2018

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    NATURE STRUCTURAL &amp; MOLECULAR BIOLOGY

  • ISSN

    1545-9993

  • e-ISSN

  • Volume of the periodical

    25

  • Issue of the periodical within the volume

    11

  • Country of publishing house

    US - UNITED STATES

  • Number of pages

    10

  • Pages from-to

    1028

  • UT code for WoS article

    000449271800009

  • EID of the result in the Scopus database

    2-s2.0-85055985092