The identification of replication origin in bacterial genomes by cumulated phase signal
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F17%3APU124947" target="_blank" >RIV/00216305:26220/17:PU124947 - isvavai.cz</a>
Result on the web
<a href="http://ieeexplore.ieee.org/abstract/document/8058561/" target="_blank" >http://ieeexplore.ieee.org/abstract/document/8058561/</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1109/CIBCB.2017.8058561" target="_blank" >10.1109/CIBCB.2017.8058561</a>
Alternative languages
Result language
angličtina
Original language name
The identification of replication origin in bacterial genomes by cumulated phase signal
Original language description
The origin of replication (oriC) plays an important role in the cell cycle as the place where DNA replication is initiated. In bacterial cells, a single replication origin can be found and its correct identification is necessary in the annotation process of newly sequenced genomes. Although the rearrangement of a whole genome sequence according to oriC should be a standard procedure, public databases still contain lots of genomes starting at a random place. This situation complicates the comparative analysis of whole bacterial genomes as only two genomes rearranged according to oriC can be reliably aligned. In this paper, we present a novel technique for oriC prediction based exclusively on utilization of cumulated phase signal which distinguishes our approach from current techniques combining application of genomic signal processing techniques with a standard character based comparison. Proposed technique is therefore fast and suitably complements the current pipeline for comparison of whole bacterial genomes by aligned downsampled signals.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
<a href="/en/project/GA17-01821S" target="_blank" >GA17-01821S: High throughput bacterial genome assembly and annotation techniques using genomic signal processing</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2017
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)
ISBN
978-1-4673-8988-4
ISSN
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e-ISSN
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Number of pages
5
Pages from-to
267-271
Publisher name
IEEE
Place of publication
neuveden
Event location
Manchester
Event date
Aug 23, 2017
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
000463852500041