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The identification of replication origin in bacterial genomes by cumulated phase signal

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F17%3APU124947" target="_blank" >RIV/00216305:26220/17:PU124947 - isvavai.cz</a>

  • Result on the web

    <a href="http://ieeexplore.ieee.org/abstract/document/8058561/" target="_blank" >http://ieeexplore.ieee.org/abstract/document/8058561/</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1109/CIBCB.2017.8058561" target="_blank" >10.1109/CIBCB.2017.8058561</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    The identification of replication origin in bacterial genomes by cumulated phase signal

  • Original language description

    The origin of replication (oriC) plays an important role in the cell cycle as the place where DNA replication is initiated. In bacterial cells, a single replication origin can be found and its correct identification is necessary in the annotation process of newly sequenced genomes. Although the rearrangement of a whole genome sequence according to oriC should be a standard procedure, public databases still contain lots of genomes starting at a random place. This situation complicates the comparative analysis of whole bacterial genomes as only two genomes rearranged according to oriC can be reliably aligned. In this paper, we present a novel technique for oriC prediction based exclusively on utilization of cumulated phase signal which distinguishes our approach from current techniques combining application of genomic signal processing techniques with a standard character based comparison. Proposed technique is therefore fast and suitably complements the current pipeline for comparison of whole bacterial genomes by aligned downsampled signals.

  • Czech name

  • Czech description

Classification

  • Type

    D - Article in proceedings

  • CEP classification

  • OECD FORD branch

    10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)

Result continuities

  • Project

    <a href="/en/project/GA17-01821S" target="_blank" >GA17-01821S: High throughput bacterial genome assembly and annotation techniques using genomic signal processing</a><br>

  • Continuities

    P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Others

  • Publication year

    2017

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Article name in the collection

    2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)

  • ISBN

    978-1-4673-8988-4

  • ISSN

  • e-ISSN

  • Number of pages

    5

  • Pages from-to

    267-271

  • Publisher name

    IEEE

  • Place of publication

    neuveden

  • Event location

    Manchester

  • Event date

    Aug 23, 2017

  • Type of event by nationality

    WRD - Celosvětová akce

  • UT code for WoS article

    000463852500041