Prokaryotic DNA Signal Downsampling for Fast Whole Genome Comparison
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00159816%3A_____%2F14%3A00063532" target="_blank" >RIV/00159816:_____/14:00063532 - isvavai.cz</a>
Alternative codes found
RIV/00216305:26220/14:PU109293
Result on the web
<a href="http://dx.doi.org/10.1007/978-3-319-06593-9_33" target="_blank" >http://dx.doi.org/10.1007/978-3-319-06593-9_33</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-3-319-06593-9_33" target="_blank" >10.1007/978-3-319-06593-9_33</a>
Alternative languages
Result language
angličtina
Original language name
Prokaryotic DNA Signal Downsampling for Fast Whole Genome Comparison
Original language description
Classification of prokaryotes is mainly based on molecular data, since next-generation sequencing platforms provide fast and effective way to capture prokaryotes' characteristics. However, two different bacterial strains of the same genus can differ in the specific parts of their genomes due to copious amounts of repetitive and transposable parts. Thus, finding an ideal segment of genome for comparison is difficult. Conventional character-based methods rely on multiple sequence alignment, rendering themextremely computationally demanding. Only small parts of genomes can be compared in reasonable time. In this paper, we present a novel algorithm based on the conversion of the whole genome sequences to cumulative phase signals. Dyadic wavelet transform(DWT) is used for lossy compression of phase signals by eliminating redundant frequency bands. Signal classification is then performed as cluster analysis using Euclidean metrics where sequence alignment is replaced by dynamic time warpin
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Advances in Intelligent Systems and Computing
ISSN
2194-5357
e-ISSN
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Volume of the periodical
283
Issue of the periodical within the volume
6
Country of publishing house
DE - GERMANY
Number of pages
11
Pages from-to
373-383
UT code for WoS article
000352133800034
EID of the result in the Scopus database
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