Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F20%3APU136417" target="_blank" >RIV/00216305:26220/20:PU136417 - isvavai.cz</a>
Alternative codes found
RIV/65269705:_____/20:00073579
Result on the web
<a href="http://dx.doi.org/10.1007/978-3-030-45385-5_51" target="_blank" >http://dx.doi.org/10.1007/978-3-030-45385-5_51</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-3-030-45385-5_51" target="_blank" >10.1007/978-3-030-45385-5_51</a>

Result language
angličtina
Original language name
Detection of Highly Variable Genome Fragments in Unmapped Reads of Escherichia coli Genomes
Original language description
Whole-genome sequencing becomes a powerful tool in the study of closely related bacterial population as a single nucleotides changes can be detected. However, the postprocessing of obtained data still remains problematic. Reference-based assembly of genomes only allows identification of shared parts of genomes. Here, we show a pipeline for de novo assembly of unmapped reads and locating variable regions in it. Identified regions can be used as new markers for bacterial genotyping.
Czech name
—
Czech description
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Type
D - Article in proceedings
CEP classification
—
OECD FORD branch
20602 - Medical laboratory technology (including laboratory samples analysis; diagnostic technologies) (Biomaterials to be 2.9 [physical characteristics of living material as related to medical implants, devices, sensors])

Project
<a href="/en/project/GA17-01821S" target="_blank" >GA17-01821S: High throughput bacterial genome assembly and annotation techniques using genomic signal processing</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year
2020
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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