A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F14%3A00432721" target="_blank" >RIV/61389030:_____/14:00432721 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1111/pbi.12182" target="_blank" >http://dx.doi.org/10.1111/pbi.12182</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1111/pbi.12182" target="_blank" >10.1111/pbi.12182</a>
Alternative languages
Result language
angličtina
Original language name
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
Original language description
With the expansion of next-generation sequencing technology and advanced bioinformatics, there has been a rapid growth of genome sequencing projects. However, while this technology enables the rapid and cost-effective assembly of draft genomes, the quality of these assemblies usually falls short of gold standard genome assemblies produced using the more traditional BAC by BAC and Sanger sequencing approaches. Assembly validation is often performed by the physical anchoring of genetically mapped markers,but this is prone to errors and the resolution is usually low, especially towards centromeric regions where recombination is limited. New approaches are required to validate reference genome assemblies. The ability to isolate individual chromosomes combined with next-generation sequencing permits the validation of genome assemblies at the chromosome level. We demonstrate this approach by the assessment of the recently published chickpea kabuli and desi genomes. While previous genetic an
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Plant Biotechnology Journal
ISSN
1467-7644
e-ISSN
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Volume of the periodical
12
Issue of the periodical within the volume
6
Country of publishing house
US - UNITED STATES
Number of pages
9
Pages from-to
778-786
UT code for WoS article
000339488200014
EID of the result in the Scopus database
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