Tools for Time-Course Simulation in Systems Biology: A Brief Overview
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F21%3APU137949" target="_blank" >RIV/00216305:26220/21:PU137949 - isvavai.cz</a>
Result on the web
<a href="https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbaa392/6076933?guestAccessKey=ad7949aa-346e-421c-a28d-669d5874a590" target="_blank" >https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbaa392/6076933?guestAccessKey=ad7949aa-346e-421c-a28d-669d5874a590</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/bib/bbaa392" target="_blank" >10.1093/bib/bbaa392</a>
Alternative languages
Result language
angličtina
Original language name
Tools for Time-Course Simulation in Systems Biology: A Brief Overview
Original language description
Dynamic modeling of biological systems is essential for understanding all properties of a given organism as it allows us to look not only at the static picture of an organism but also at its behavior under various conditions. With the increasing amount of experimental data, the number of tools that enable dynamic analysis also grows. However, various tools are based on different approaches, use different types of data, and offer different functions for analyses, so it can be difficult to choose the most suitable tool for a selected type of model. Here, we bring a brief overview containing descriptions of 50 tools for the reconstruction of biological models, their time-course simulation, and dynamic analysis. We examined each tool using test data and divided them based on the qualitative and quantitative nature of the mathematical apparatus they use.
Czech name
—
Czech description
—
Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
—
OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
—
Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2021
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Briefings in Bioinformatics
ISSN
1467-5463
e-ISSN
1477-4054
Volume of the periodical
22
Issue of the periodical within the volume
5
Country of publishing house
GB - UNITED KINGDOM
Number of pages
15
Pages from-to
1-15
UT code for WoS article
000709461800009
EID of the result in the Scopus database
2-s2.0-85116172959