Potential functional capacity of a non-model organism Aneurinibacillus species H1

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F21%3APU141070" target="_blank" >RIV/00216305:26220/21:PU141070 - isvavai.cz</a>

Result on the web

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DOI - Digital Object Identifier

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Result language

angličtina

Original language name

Potential functional capacity of a non-model organism Aneurinibacillus species H1

Original language description

Polyhydroxyalkanoates (PHA) are polyesters similar to industrially processed synthetic polymers. Aneurinibacillus species H1 belongs to thermophilic gram-positive bacteria capable of accumulating the PHA in a high amount under certain conditions. Whereas the bacterium´s genetic information has not been studied for its ability to accumulate PHA yet, we bring the first genome assembly along with insight into its functional properties. The genome was assembled using sequencing data obtained from Oxford Nanopore MinION and Illumina MiSeq platforms. In the first step, the initial assembly from Nanopore reads was created. Subsequently, trimmed Illumina reads were mapped to the initial assembly with the result of final assembly. The final assembly was rearranged according to the replication origin (oriC) in a way that the DnaA gene is the first gene. To reveal potential functional capacity of the genome, we analysed particular protein coding genes and divide them according to clusters of orthologous genes (C

Czech name

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Czech description

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Type

O - Miscellaneous

CEP classification

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OECD FORD branch

10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)

Project

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Continuities

S - Specificky vyzkum na vysokych skolach

Publication year

2021

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů