Comparison of genetic diversity structure analyses of SSR molecular marker data within apple (Malus x domestica) genetic resources

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F14864347%3A_____%2F12%3A%230000382" target="_blank" >RIV/14864347:_____/12:#0000382 - isvavai.cz</a>

Alternative codes found

RIV/25271121:_____/12:#0000186

Result on the web

<a href="http://www.nrcresearchpress.com/doi/abs/10.1139/g2012-054" target="_blank" >http://www.nrcresearchpress.com/doi/abs/10.1139/g2012-054</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1139/g2012-054" target="_blank" >10.1139/g2012-054</a>

Result language

angličtina

Original language name

Comparison of genetic diversity structure analyses of SSR molecular marker data within apple (Malus x domestica) genetic resources

Original language description

The aim of this study was to compare traditional hierarchical clustering techniques and principal coordinate analysis (PCoA) with the model-based Bayesian cluster analyses in relation to subpopulation differentiation based on breeding history and geographical origin of apple (Malus x domestica Borkh.) cultivars and landraces. We presented the use of a set of 10 microsatellite (SSR) loci for genetic diversity structure analyses of 273 apple accessions from national genetic resources. These SSR loci yielded a total of 113 polymorphic SSR alleles, with 5?18 alleles per locus. SSR molecular data were successfully used in binary and allelic input format for all genetic diversity analyses, but allelic molecular data did not reveal reliable results with the NTSYS-pc and BAPS softwares. A traditional cluster analysis still provided an easy and effective way for determining genetic diversity structure in the apple germplasm collection. A model-based Bayesian analysis also provided the clusterin

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

EB - Genetics and molecular biology

OECD FORD branch

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Project

<a href="/en/project/QH72163" target="_blank" >QH72163: Evaluation of apple (Malus x domestica) genetic resources by molecular genetic methods.</a><br>

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2012

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Genome

ISSN

0831-2796

e-ISSN

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Volume of the periodical

55

Issue of the periodical within the volume

9

Country of publishing house

CA - CANADA

Number of pages

19

Pages from-to

647-665

UT code for WoS article

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EID of the result in the Scopus database

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