Gensei: software for generating serial sections through objects with known statistical properties and simulating stereological quantification in 3D
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F49777513%3A23520%2F09%3A00502789" target="_blank" >RIV/49777513:23520/09:00502789 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Gensei: software for generating serial sections through objects with known statistical properties and simulating stereological quantification in 3D
Original language description
The software is used for generating series of two-dimensional sections through a volume filled with ellipsoids, cylinders and fibres with a priori known statistical properties. Arbitrary series of images are produced in order to represent models of histological structures, such as cells and fibres of the extracellular matrix forming biological tissues. These images represent either serial consecutive sections or sections sampled in a systematic uniform manner. The user can set the number and types of classes of three-dimensional objects (ellipsoids, cylinders), dimensions of the reference volume, size of the generated images, the number of objects and sections to be generated, length-to-width ratio and volume fraction of the objects. Three perpendicular series of sections through the same reference volume and the same objects may be generated, thus testing the isotropy of the objects. The output of the simulation is stored as three series of image files together with a detailed report
Czech name
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Czech description
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Classification
Type
R - Software
CEP classification
EA - Morphology and cytology
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GA106%2F09%2F0740" target="_blank" >GA106/09/0740: Microstructure oriented hierarchical modeling of brain perfusion for CT based cerebral blood flow evaluation</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2009
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Internal product ID
gensei-2009.2
Technical parameters
ZČU, Univerzitní 8, R. Cimrman, tel.: 377 634 711, cimrman3@ntc.zcu.cz. Umožňuje simulovat histologické řezy buňkami a vlákny a hodnocení jejich objemů, povrchů a délek.
Economical parameters
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Owner IČO
49777513
Owner name
Západočeská univerzita v Plzni, Fakulta aplikovaných věd, Katedra mechaniky