SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F10%3A00347472" target="_blank" >RIV/60077344:_____/10:00347472 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
SeqGrapheR Tool for visualization and analysi of clusters of repetitive sequences from next generation sequencing data
Original language description
R package that provides a simple graphical user interface for interactive visualization of sequence clusters using the GGObi program and the R package rggobi [18,19]. SeqGrapheR also enables the selection of groups of reads from a graph and simultaneousviewing of the graph layout, sequence assembly results and similarity searches. SeqGrapheR tool is used for elucidation of the variability of repetitive elements and for reconstruction repetitive element consensus sequences.
Czech name
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Czech description
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Classification
Type
R - Software
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
Z - Vyzkumny zamer (s odkazem do CEZ)
Others
Publication year
2010
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Internal product ID
SeqGrapheR ev.č UMBR-2010/1
Technical parameters
Software implementovany jako R knihovna (www.r-project.org)
Economical parameters
Zvýšení efektivity při zpracovávání sekvenačních dat
Owner IČO
60077344
Owner name
Biologicke Centrum AV ČR, v.v