Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F11%3A00367250" target="_blank" >RIV/60077344:_____/11:00367250 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1007/s00705-011-1077-x" target="_blank" >http://dx.doi.org/10.1007/s00705-011-1077-x</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/s00705-011-1077-x" target="_blank" >10.1007/s00705-011-1077-x</a>
Alternative languages
Result language
angličtina
Original language name
Complete genome sequences of blueberry red ringspot virus (Caulimoviridae) isolates from the Czech Republic and Slovenia
Original language description
Genomic DNA of blueberry red ringspot virus (genus Soymovirus, family Caulimoviridae) from highbush blueberry plants growing for years in the Czech Republic and Slovenia was sequenced. The circular dsDNA genomes consist of 8,303 and 8,299 nt, respectively, and contain eight open reading frames (ORFs) longer than 100 amino acids. The European isolates are 90% to 99% identical in aa sequences of distinct proteins. In contrast to the American New Jersey isolate, in-frame initiation codons have been found upstream from AUG codons of ORFs I, IV and V in the European isolates. These and other differences resulted in a longer capsid protein, reverse transcriptase, movement protein and protein the encoded by ORF VII and reduced (75.4% to 93.7%) amino acid identity with corresponding proteins of the New Jersey isolate.
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EE - Microbiology, virology
OECD FORD branch
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Result continuities
Project
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Continuities
Z - Vyzkumny zamer (s odkazem do CEZ)
Others
Publication year
2011
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Archives of Virology
ISSN
0304-8608
e-ISSN
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Volume of the periodical
156
Issue of the periodical within the volume
10
Country of publishing house
AT - AUSTRIA
Number of pages
3
Pages from-to
1901-1903
UT code for WoS article
000296510200026
EID of the result in the Scopus database
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