Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F12%3A00382315" target="_blank" >RIV/60077344:_____/12:00382315 - isvavai.cz</a>

Result on the web

<a href="http://dx.doi.org/10.1111/j.1439-0434.2012.01919.x" target="_blank" >http://dx.doi.org/10.1111/j.1439-0434.2012.01919.x</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1111/j.1439-0434.2012.01919.x" target="_blank" >10.1111/j.1439-0434.2012.01919.x</a>

Result language

angličtina

Original language name

Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

Original language description

Conserved block III of the RNA polymerase L gene is predicted to be essential for RNA polymerase function of cytorhabdoviruses and may be a target in exploringevolutionary relationships among rhabdoviruses. Sequence comparison of an amplified segment ofthepolymerase gene isolated from six English ivy samples revealed its high similarity with known plant cytorhabdoviruses. Lettuce yellow mottle viruswas recognized as a closely related virus with 79.6% aa identity in the amplified region of the CB2 isolate and around 70% aa identity for the CB1, CB6 and CB18 isolates. The CB11 and CB16 isolates show a closer relationship to Raspberry vein chlorosis virus, with 75 and 69% aa identity, respectively. These data in combination with phylogenetic analyses resulted in discrimination of four new rhabdoviruses. The names Ivy latent viruses 1, 2, 3 and 4 (IvLV1, IvLV2, IvLV3 and IvLV4) are proposed for these viruses.

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

EE - Microbiology, virology

OECD FORD branch

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Project

<a href="/en/project/GAP501%2F12%2F1747" target="_blank" >GAP501/12/1747: Diversity and distribution of viruses across lichen species</a><br>

Continuities

Z - Vyzkumny zamer (s odkazem do CEZ)<br>I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2012

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Journal of Phytopathology - Phytopathologische Zeitschrift

ISSN

0931-1785

e-ISSN

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Volume of the periodical

160

Issue of the periodical within the volume

7-8

Country of publishing house

DE - GERMANY

Number of pages

5

Pages from-to

377-381

UT code for WoS article

000305897900009

EID of the result in the Scopus database

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