SSRs, SNPs and DArTs comparison on estimation of relatedness and genetic parameters´ precision from a small half-sib sample population of Eucalyptus grandis

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41320%2F16%3A70567" target="_blank" >RIV/60460709:41320/16:70567 - isvavai.cz</a>

Result on the web

<a href="http://dx.doi.org/10.1007/s11032-016-0522-7" target="_blank" >http://dx.doi.org/10.1007/s11032-016-0522-7</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1007/s11032-016-0522-7" target="_blank" >10.1007/s11032-016-0522-7</a>

Result language

angličtina

Original language name

SSRs, SNPs and DArTs comparison on estimation of relatedness and genetic parameters´ precision from a small half-sib sample population of Eucalyptus grandis

Original language description

Simple Sequence Repeats (SSR) are the most widely used molecular markers for relatedness inference due to their multi-allelic nature and high informativeness. However, there is a growing trend towards using high-throughput and inter-specific transferable Single Nucleotide Polymorphisms (SNP) and Diversity Array Technology (DArT) in forest genetics owing to their wide genome coverage. We compared the efficiency of 15 SSRs, 181 SNPs, and 2,816 DArTs to estimate the relatedness coefficients, and their effects on genetic parameters´ precision, in a relatively small data set of an open-pollinated progeny trial of Eucalyptus grandis (Hill ex Maiden) with limited relationship from the pedigree. Both simulations and real data of Eucalyptus grandis were used to study the statistical performance of three relatedness estimators based on co-dominant markers. Relatedness estimates in pairs of individuals belonging to the same family (related) were higher for DArTs than for SNPs and SSRs. DArTs performed better co

Czech name

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Czech description

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Type

J_imp - Article in a specialist periodical, which is included in the Web of Science database

CEP classification

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OECD FORD branch

40102 - Forestry

Project

—

Continuities

S - Specificky vyzkum na vysokych skolach

Publication year

2016

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

MOLECULAR BREEDING

ISSN

1380-3743

e-ISSN

—

Volume of the periodical

36

Issue of the periodical within the volume

7

Country of publishing house

CZ - CZECH REPUBLIC

Number of pages

19

Pages from-to

1-19

UT code for WoS article

000380238300015

EID of the result in the Scopus database

2-s2.0-84978044407