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A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41320%2F21%3A89528" target="_blank" >RIV/60460709:41320/21:89528 - isvavai.cz</a>

  • Result on the web

    <a href="https://www.nature.com/articles/s42003-021-02602-3" target="_blank" >https://www.nature.com/articles/s42003-021-02602-3</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1038/s42003-021-02602-3" target="_blank" >10.1038/s42003-021-02602-3</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest

  • Original language description

    Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy more than 100 million m(3) of spruce in a single year. We report a 236,8 Mb I. typographus genome assembly using PacBio long-read sequencing. The final phased assembly has a contig N-50 of 6,65 Mb in 272 contigs and is predicted to contain 23,923 protein-coding genes. We reveal expanded gene families associated with plant cell wall degradation, including pectinases, aspartyl proteases, and glycosyl hydrolases. This genome sequence from the genus Ips provides timely resources to address questions about the evolutionary biology of the true weevils (Curculionidae), one of the most species-rich animal families. In forests of today, increasingly stressed by global warming, this draft genome may assist in develo

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    40102 - Forestry

Result continuities

  • Project

  • Continuities

    S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2021

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    COMMUNICATIONS BIOLOGY

  • ISSN

    2399-3642

  • e-ISSN

  • Volume of the periodical

    4

  • Issue of the periodical within the volume

    1

  • Country of publishing house

    DE - GERMANY

  • Number of pages

    9

  • Pages from-to

    1-9

  • UT code for WoS article

    000694882700010

  • EID of the result in the Scopus database

    2-s2.0-85114686473