Polymorphism of Bolivian accessions of Arachis hypogaea L. revealed by allergen coding DNA markers
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41340%2F23%3A96612" target="_blank" >RIV/60460709:41340/23:96612 - isvavai.cz</a>
Result on the web
<a href="https://pse.agriculturejournals.cz/artkey/pse-202312-0006_polymorphism-of-bolivian-accessions-of-arachis-hypogaea-l-revealed-by-allergen-coding-dna-markers.php" target="_blank" >https://pse.agriculturejournals.cz/artkey/pse-202312-0006_polymorphism-of-bolivian-accessions-of-arachis-hypogaea-l-revealed-by-allergen-coding-dna-markers.php</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.17221/306/2023-PSE" target="_blank" >10.17221/306/2023-PSE</a>
Alternative languages
Result language
angličtina
Original language name
Polymorphism of Bolivian accessions of Arachis hypogaea L. revealed by allergen coding DNA markers
Original language description
Arachis hypogaea L. is an annual legume that is one of the most consumed plant species. On the other hand, it belongs to one of the most monitored clinically important allergens worldwide. The polymorphism of this species based on allergen coding genes could be useful in its characterisation, but previously, no allergen-based marker techniques have been developed for peanuts. A new type of DNA-based markers of coding regions were used to analyse the variability of 21 peanut accessions – BBAP (Bet v1 based amplicon polymorphism), PBAP (profilin based amplicon polymorphism), and VBAP (vicilin based amplicon polymorphism). All of the used technique provided polymorphic fingerprints and distinguished the analysed peanut accessions. The effectivity of these techniques corresponds to the presence of the allergen homologous sequences that are a part of the A. hypogaea genome. VBAP was the most effective in distinguishing the analysed peanut accessions when compared to the results of BBAP and PBAB. For BBAP, two of the analysed accessions provided the same fingerprinting pattern. The ability of the used markers to detect polymorphisms was comparable, with an average polymorphism information content (PIC) value of 0.47.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
40101 - Agriculture
Result continuities
Project
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Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2023
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Plant, Soil and Environment
ISSN
1214-1178
e-ISSN
1214-1178
Volume of the periodical
69
Issue of the periodical within the volume
12
Country of publishing house
CZ - CZECH REPUBLIC
Number of pages
13
Pages from-to
615-627
UT code for WoS article
001127081800001
EID of the result in the Scopus database
2-s2.0-85180450786