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Multiple 3D RNA Structure Superposition Using Neighbor Joining

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60461373%3A22310%2F15%3A43900537" target="_blank" >RIV/60461373:22310/15:43900537 - isvavai.cz</a>

  • Alternative codes found

    RIV/00216208:11320/15:10275738

  • Result on the web

    <a href="http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6883172" target="_blank" >http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6883172</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1109/TCBB.2014.2351810" target="_blank" >10.1109/TCBB.2014.2351810</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Multiple 3D RNA Structure Superposition Using Neighbor Joining

  • Original language description

    Recent advances in RNA research and the steady growth of available RNA structures call for bioinformatics methods for handling and analyzing RNA structural data. Recently, we introduced SETTER-a fast and accurate method for RNA pairwise structure alignment. In this paper, we describe MultiSETTER, SETTER extension for multiple RNA structure alignment. MultiSETTER combines SETTER's decomposition of RNA structures into non-overlapping structural subunits with the multiple sequence alignment algorithm ClustalW adapted for the structure alignment. The accuracy of MultiSETTER was assessed by the automatic classification of RNA structures and its comparison to SCOR annotations. In addition, MultiSETTER classification was also compared to multiple sequence alignment-based and secondary structure alignment-based classifications provided by LocARNA and RNADistance tools, respectively. MultiSETTER precompiled Windows libraries, as well as the C++ source code, are freely available from http://siret.cz/multisetter.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    IN - Informatics

  • OECD FORD branch

Result continuities

  • Project

    <a href="/en/project/GAP202%2F11%2F0968" target="_blank" >GAP202/11/0968: Large-scale Nonmetric Similarity Search in Complex Domains</a><br>

  • Continuities

    I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Others

  • Publication year

    2015

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

  • ISSN

    1545-5963

  • e-ISSN

  • Volume of the periodical

    12

  • Issue of the periodical within the volume

    3

  • Country of publishing house

    US - UNITED STATES

  • Number of pages

    11

  • Pages from-to

    520-530

  • UT code for WoS article

    000359281500003

  • EID of the result in the Scopus database