Silvibacterium bohemicum gen. nov sp nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F16%3A00467853" target="_blank" >RIV/61388971:_____/16:00467853 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1016/j.syapm.2015.12.005" target="_blank" >http://dx.doi.org/10.1016/j.syapm.2015.12.005</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/j.syapm.2015.12.005" target="_blank" >10.1016/j.syapm.2015.12.005</a>
Alternative languages
Result language
angličtina
Original language name
Silvibacterium bohemicum gen. nov sp nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park
Original language description
During the course of a study assessing the bacterial diversity of a coniferous forest soil (pH 3.8) in the Bohemian Forest National Park (Czech Republic), we isolated strain S15(T) which corresponded to one of the most abundant soil OTUs. Strain S15(T) is represented by Gram-negative, motile, rod-like cells that are 0.3-0.5 mu m in diameter and 0.9-1.1 mu m in length. Its pH range for growth was 3-6, with optimal conditions found at approximately 4-5. It can grow at temperatures between 20 degrees C and 28 degrees C, with optimum growth at 22-24 degrees C. Its respiratory quinone is MK-8, and its main fatty acid is iso-C-15:0 (73.7%). The G+C DNA content was 58.2 mol%. According to the 16S rRNA gene sequence analysis, strain S15T belongs to subdivision 1 of the phylum Acidobacteria, being affiliated to the cluster of Acidipila rosea AP8(T) and Acidobacterium capsulatum ATCC 51196(T). Analysis of the S15(T) genome revealed the presence of 404 genes that are involved in carbohydrate metabolism, which indicates the metabolic potential to degrade polysaccharides of plant and fungal origin. Based on genotypic and phenotypic characteristics, the strain S15(T) represents a new genus and species within the family Acidobacteriaceae, for which the name Silvibacterium bohemicum gen. nov., sp. nov. is proposed (type strain S15(T) = LMG 28607(T) = CECT 8790(T)).
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EE - Microbiology, virology
OECD FORD branch
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Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2016
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Systematic and Applied Microbiology
ISSN
0723-2020
e-ISSN
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Volume of the periodical
39
Issue of the periodical within the volume
FEB
Country of publishing house
DE - GERMANY
Number of pages
6
Pages from-to
14-19
UT code for WoS article
000370915000003
EID of the result in the Scopus database
2-s2.0-84983094563