A guide for the analysis of plant microbial communities through high-throughput sequencing methods
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F24%3A00604033" target="_blank" >RIV/61388971:_____/24:00604033 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1016/B978-0-443-18446-8.00010-3" target="_blank" >http://dx.doi.org/10.1016/B978-0-443-18446-8.00010-3</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/B978-0-443-18446-8.00010-3" target="_blank" >10.1016/B978-0-443-18446-8.00010-3</a>
Alternative languages
Result language
angličtina
Original language name
A guide for the analysis of plant microbial communities through high-throughput sequencing methods
Original language description
Plant microbiome research allows an understanding of microbial functions and their ecology. This knowledge can be applied to develop efficient biofertilizers based on the most relevant taxa or functions of the microbiome. Nowadays, the advance of high-throughput sequencing methods have enabled us to get sequences from (meta)genomes, (meta)transcriptomes, and marker genes from complete microbial communities. To reach this goal, several programs allow the decoding of many features of the plant microbiome, such as its taxonomic composition and its functions. However, the analysis of this kind of data is not so easy and requires some expertise in bioinformatics. Here we aim to provide a brief introduction to the analysis of high-throughput sequencing data to help researchers be immersed in these methodologies. We include key steps and common workflows in plant microbiome research, including many examples of bioinformatic tools and databases, and mention their inherent biases. We hope this chapter allows researchers that are not used to utilizing next-generation sequencing to be started with these methods easily.
Czech name
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Czech description
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Classification
Type
C - Chapter in a specialist book
CEP classification
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OECD FORD branch
10606 - Microbiology
Result continuities
Project
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Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2024
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Book/collection name
Microbial Technology for Agro-Ecosystems: Crop Productivity, Sustainability, and Biofortification
ISBN
9780443184468
Number of pages of the result
17
Pages from-to
(2024)
Number of pages of the book
386
Publisher name
Academic Press
Place of publication
Cambridge
UT code for WoS chapter
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