LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F15%3A00446262" target="_blank" >RIV/61389030:_____/15:00446262 - isvavai.cz</a>

Result on the web

<a href="http://dx.doi.org/10.1093/dnares/dsu042" target="_blank" >http://dx.doi.org/10.1093/dnares/dsu042</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1093/dnares/dsu042" target="_blank" >10.1093/dnares/dsu042</a>

Result language

angličtina

Original language name

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

Original language description

Improved knowledge of genome composition, especially of its repetitive component, generates important information for both theoretical and applied research. The olive repetitive component is made up of two main classes of sequences: tandem repeats and retrotransposons (REs). In this study, we provide characterization of a sample of 254 unique full-length long terminal repeat (LTR) REs. In the sample, Ty1-Copia elements were more numerous than Ty3-Gypsy elements. Mapping a large set of Illumina whole-genome shotgun reads onto the identified retroelement set revealed that Gypsy elements are more redundant than Copia elements. The insertion time of intact retroelements was estimated based on sister LTR's divergence. Although some elements inserted relatively recently, the mean insertion age of the isolated retroelements is around 18 million yrs. Gypsy and Copia retroelements showed different waves of transposition, with Gypsy elements especially active between 10 and 25 million yrs ago an

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

EB - Genetics and molecular biology

OECD FORD branch

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Project

Result was created during the realization of more than one project. More information in the Projects tab.

Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2015

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Dna Research

ISSN

1340-2838

e-ISSN

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Volume of the periodical

22

Issue of the periodical within the volume

1

Country of publishing house

GB - UNITED KINGDOM

Number of pages

10

Pages from-to

91-100

UT code for WoS article

000350442100009

EID of the result in the Scopus database

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