Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F15%3A00451393" target="_blank" >RIV/61389030:_____/15:00451393 - isvavai.cz</a>

Result on the web

<a href="http://dx.doi.org/10.1186/s12864-015-2030-2" target="_blank" >http://dx.doi.org/10.1186/s12864-015-2030-2</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1186/s12864-015-2030-2" target="_blank" >10.1186/s12864-015-2030-2</a>

Result language

angličtina

Original language name

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

Original language description

The large and complex genome of bread wheat (Triticum aestivum L., similar to 17 Gb) requires high resolution genome maps with saturated marker scaffolds to anchor and orient BAC contigs/sequence scaffolds for whole genome assembly. Radiation hybrid (RH)mapping has proven to be an excellent tool for the development of such maps for it offers much higher and more uniform marker resolution across the length of the chromosome compared to genetic mapping and does not require marker polymorphism per se, asit is based on presence (retention) vs. absence (deletion) marker assay. A total of 609 markers were mapped to 503 unique positions on the seven D-genome chromosomes, with a total map length of 14,706.7 cR. The average distance between any two marker loci was 29.2 cR which corresponds to 2.1 cM or 9.8 Mb. The average mapping resolution across the D-genome was estimated to be 0.34 Mb (Mb/cR) or 0.07 cM (cM/cR). The RH maps showed almost perfect agreement with several published maps with r

Czech name

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Czech description

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Type

J_x - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

CEP classification

EB - Genetics and molecular biology

OECD FORD branch

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Project

<a href="/en/project/GAP501%2F12%2F2554" target="_blank" >GAP501/12/2554: Physical map of wheat chromosome arm 7DS and its use to clone a Russian wheat aphid resistance gene</a><br>

Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2015

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

B M C Genomics

ISSN

1471-2164

e-ISSN

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Volume of the periodical

16

Issue of the periodical within the volume

OCT 16

Country of publishing house

US - UNITED STATES

Number of pages

14

Pages from-to

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UT code for WoS article

000362866400002

EID of the result in the Scopus database

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