De novo transcriptome assembly of heavy metal tolerant Silene dioica
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F17%3A00475870" target="_blank" >RIV/61389030:_____/17:00475870 - isvavai.cz</a>
Alternative codes found
RIV/68081707:_____/17:00507080
Result on the web
<a href="http://dx.doi.org/10.1016/j.gdata.2017.01.004" target="_blank" >http://dx.doi.org/10.1016/j.gdata.2017.01.004</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/j.gdata.2017.01.004" target="_blank" >10.1016/j.gdata.2017.01.004</a>
Alternative languages
Result language
angličtina
Original language name
De novo transcriptome assembly of heavy metal tolerant Silene dioica
Original language description
Silene dioica is a dioecious plant of the family Caryophyllaceae. In the present study, we used Illumina sequencing technology (MiSeq) to sequence, de novo assembly and annotate the transcriptomes of male and female copper tolerant S. dioica individuals. We sequenced the normalized mRNA of roots, shoots, flower buds and flowers for each sex. Raw reads of the transcriptome assembly project for S. dioica male and female individual have been deposited in NCBI's Sequence Read Archive (SRA) database with the accession number SRP094611. The Trinity and Detonate program was used to de novo assembly 92,347 transcripts for male and 94,757 transcripts for female transcriptome. The assembled transcriptome sequences for S. dioica male and female individuals can be accessed at NCBI with the following accession numbers: GFCG00000000 (male), GFCH00000000 (female). The obtained transcriptomic data will be useful for further studies focusing on copper tolerance, comparative transcriptome analysis with other Silene species and sex chromosomes evolution.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10611 - Plant sciences, botany
Result continuities
Project
<a href="/en/project/GP13-34962P" target="_blank" >GP13-34962P: Silene dioica as a model species for heavy metal tolerance</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2017
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
GENOMICS DATA
ISSN
2213-5960
e-ISSN
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Volume of the periodical
11
Issue of the periodical within the volume
MAR
Country of publishing house
NL - THE KINGDOM OF THE NETHERLANDS
Number of pages
2
Pages from-to
118-119
UT code for WoS article
000395325800030
EID of the result in the Scopus database
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