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De novo transcriptome assembly of heavy metal tolerant Silene dioica

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081707%3A_____%2F17%3A00507080" target="_blank" >RIV/68081707:_____/17:00507080 - isvavai.cz</a>

  • Alternative codes found

    RIV/61389030:_____/17:00475870

  • Result on the web

    <a href="https://doi.org/10.1016/j.gdata.2017.01.004" target="_blank" >https://doi.org/10.1016/j.gdata.2017.01.004</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1016/j.gdata.2017.01.004" target="_blank" >10.1016/j.gdata.2017.01.004</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    De novo transcriptome assembly of heavy metal tolerant Silene dioica

  • Original language description

    Silene dioica is a dioecious plant of the family Caryophyllaceae. In the present study, we used Illumina sequencing technology (MiSeq) to sequence, de novo assembly and annotate the transcriptomes of male and female copper tolerant S. dioica individuals. We sequenced the normalized mRNA of roots, shoots, flower buds and flowers for each sex. Raw reads of the transcriptome assembly project for S. dioica male and female individual have been deposited in NCBI's Sequence Read Archive (SRA) database with the accession number SRP094611. The Trinity and Detonate program was used to de novo assembly 92,347 transcripts for male and 94,757 transcripts for female transcriptome. The assembled transcriptome sequences for S. dioica male and female individuals can be accessed at NCBI with the following accession numbers: GFCG00000000 (male), GFCH00000000 (female). The obtained transcriptomic data will be useful for further studies focusing on copper tolerance, comparative transcriptome analysis with other Silene species and sex chromosomes evolution. (C) 2017 The Authors. Published by Elsevier Inc.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    10603 - Genetics and heredity (medical genetics to be 3)

Result continuities

  • Project

  • Continuities

    I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Others

  • Publication year

    2017

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    GENOMICS DATA

  • ISSN

    2213-5960

  • e-ISSN

  • Volume of the periodical

    11

  • Issue of the periodical within the volume

    MAR 2017

  • Country of publishing house

    NL - THE KINGDOM OF THE NETHERLANDS

  • Number of pages

    2

  • Pages from-to

    118-119

  • UT code for WoS article

    000395325800030

  • EID of the result in the Scopus database