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Complex analyses of inverted repeats in mitochondrial genomes revealed their importance and variability

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61988987%3A17310%2F18%3AA1901P6O" target="_blank" >RIV/61988987:17310/18:A1901P6O - isvavai.cz</a>

  • Alternative codes found

    RIV/68081707:_____/18:00492380 RIV/62156489:43110/18:43912954

  • Result on the web

    <a href="https://academic.oup.com/bioinformatics/article/34/7/1081/4604597" target="_blank" >https://academic.oup.com/bioinformatics/article/34/7/1081/4604597</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1093/bioinformatics/btx729" target="_blank" >10.1093/bioinformatics/btx729</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Complex analyses of inverted repeats in mitochondrial genomes revealed their importance and variability

  • Original language description

    MotivationThe NCBI database contains mitochondrial DNA (mtDNA) genomes from numerous species. We investigated the presence and locations of inverted repeat sequences (IRs) in these mtDNA sequences, which are known to be important for regulating nuclear genomes.ResultsIRs were identified in mtDNA in all species. IR lengths and frequencies correlate with evolutionary age and the greatest variability was detected in subgroups of plants and fungi and the lowest variability in mammals. IR presence is non-random and evolutionary favoured. The frequency of IRs generally decreased with IR length, but not for IRs 24 or 30?bp long, which are 1.5 times more abundant. IRs are enriched in sequences from the replication origin, followed by D-loop, stem-loop and miscellaneous sequences, pointing to the importance of IRs in regulatory regions of mitochondrial DNA.Availability and ImplementationData were produced using Palindrome analyser, freely available on the web at http://bioinformatics.ibp.cz.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database

  • CEP classification

  • OECD FORD branch

    10600 - Biological sciences

Result continuities

  • Project

    <a href="/en/project/GA15-21855S" target="_blank" >GA15-21855S: Influence of conformation motifs and epigenetic modifications to DNA binding properties of p53 family proteins</a><br>

  • Continuities

    S - Specificky vyzkum na vysokych skolach

Others

  • Publication year

    2018

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    BIOINFORMATICS

  • ISSN

    1367-4803

  • e-ISSN

    1460-2059

  • Volume of the periodical

    34

  • Issue of the periodical within the volume

    7

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    5

  • Pages from-to

    1081-1085

  • UT code for WoS article

    000428840000001

  • EID of the result in the Scopus database