YAPS: Yet Another Protein Similarity
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61989100%3A27240%2F09%3A86075662" target="_blank" >RIV/61989100:27240/09:86075662 - isvavai.cz</a>
Result on the web
—
DOI - Digital Object Identifier
—
Alternative languages
Result language
angličtina
Original language name
YAPS: Yet Another Protein Similarity
Original language description
In this article we present a novel method for measuring protein similarity based on their tertiary structure. Our new method deals with suffix trees and classical information retrieval tasks, such as the vector space model, using tf-idf term weighing schema or using various types of similarity measures. Our goal to use the whole PDB database of known proteins, not just some kinds of selections, which have been studied in other works. For verification of our algorithm we are using comparisons with the SCOP database which is maintained primarily by humans. The next goal is to be able to categorize proteins not included in the latest version of the SCOP database with nearly 100% accuracy.
Czech name
—
Czech description
—
Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
—
Result continuities
Project
—
Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2009
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
2009 INTERNATIONAL CONFERENCE OF SOFT COMPUTING AND PATTERN RECOGNITION
ISBN
978-1-4244-5330-6
ISSN
—
e-ISSN
—
Number of pages
8
Pages from-to
—
Publisher name
IEEE, 345 E 47TH ST, NEW YORK, NY 10017 USA
Place of publication
NEW YORK
Event location
Malajsie
Event date
Dec 4, 2009
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
000277207700087