Automatic building of nucleic acids structures
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62157124%3A16370%2F06%3A00000738" target="_blank" >RIV/62157124:16370/06:00000738 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Automatic building of nucleic acids structures
Original language description
Molecular fragments are located in an electron density map by a phased rotation conformation and translation function, as implemented in the program NUT [1]. Two types of backbone fragments can be used.Arigid double helical fragment NAhelix of 90 atoms is used to locate stretches of regularA-RNA (DNA) structures. The position and orientation of the fragment can be refined. NAhelix is suitable for low-resolution structures. Typical RNA structure contains about 70% of the double-helical conformation. Thesecond fragment is RNAbone (17 atoms), which represents mononucleotide of phosphate-sugar- phosphate type. The fragment is flexible and all backbone torsion angles can be varied during the search. For computation reasons the search is restricted by a table of allowed conformations. The most frequent conformations were determined by a conformation family generator [2] utilizing knowledge of sugar-phosphate-sugar conformation families [3]. The RNAbone is suitable for intermediate resolutio
Czech name
Automatická tvorba struktur nukleových kyselin
Czech description
Molekulární fragmenty byly umístěny do mapy elektronové hustoty tak, jak je obvyklé v programu NUT. Bylo možno použít 2 typy páteřních fragmentů: rigidní dvojitě helikální fragment pro modelování úseků A-RNA nebo DNA a flexibilní fragment RNA, který představuje mononukleotid typu fosfát-cukr-fosfát. Byly nalezeny nejpravděpodobnější konformace, vytvořen model polyribonukleotidového řetězce a modely byly dále testovány.
Classification
Type
M - Conference organization
CEP classification
CF - Physical chemistry and theoretical chemistry
OECD FORD branch
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Result continuities
Project
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Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2006
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Event location
Leuven
Event country
DK - DENMARK
Event starting date
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Event ending date
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Total number of attendees
500
Foreign attendee count
495
Type of event by attendee nationality
EUR - Evropská akce