Simple Tool for Semi-automated Evaluation of Yeast Colony Images

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985556%3A_____%2F13%3A00381971" target="_blank" >RIV/67985556:_____/13:00381971 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Result language
angličtina
Original language name
Simple Tool for Semi-automated Evaluation of Yeast Colony Images
Original language description
A tool for semi-automated evaluation of images of yeast colonies is presented in the paper. The input data for the tool is a batch of Petri dish images, possibly in nested directories, the output is written to a text file in a simple CSV (comma-separatedvalues) format. The tool is designed to evaluate, for each dish image, the relative coverage of the dish and the number of colonies contained in the dish. It is intended for use in a research laboratory, where a general-purpose imaging setup is used totake the images, which are then processed off-line. In the paper, the characteristic features of the yeast colony images are described and the processing flow and the user interface of the tool are reviewed. The performance of the counting is evaluated using a test set of 245 images with typical relative coverage of less than 10%.
Czech name
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Czech description
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Project
<a href="/en/project/TA01010931" target="_blank" >TA01010931: System for FISH analysis evaluation support</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year
2013
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Book/collection name
Biomedical Engineering Systems and Technologies, 4th International Joint Conference, BIOSTEC 2011, Revised Selected Papers
ISBN
978-3-642-29751-9
Number of pages of the result
16
Pages from-to
110-125
Number of pages of the book
410
Publisher name
Springer
Place of publication
Berlin
UT code for WoS chapter
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