Automated counting of yeast colonies using the Fast Radial Transform algorithm

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985556%3A_____%2F11%3A00355696" target="_blank" >RIV/67985556:_____/11:00355696 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Result language
angličtina
Original language name
Automated counting of yeast colonies using the Fast Radial Transform algorithm
Original language description
A method for counting yeast colonies in images of Petri dishes, based on the Fast Radial Transform by Loy and Zelinsky, is introduced and evaluated in the paper. Images, produced by a general-purpose imaging setup, are considered. The performance of themethod has been evaluated with a test set of 245 images. The images typically contained between 10 and 70 colonies per dish, with relative coverage of the dish less than 10% of the area. The average counting error (missed colonies) on this set was under4%. A tool, implementing the method, has been developed in Matlab. The tool provides a batch mode for processing of larger image sets prepared beforehand in the darkroom and it automates the process of counting as much as possible. It is available for download or can be requested from the authors of the paper, in both cases free on charge.
Czech name
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Czech description
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Project
<a href="/en/project/1M0567" target="_blank" >1M0567: Centre for Applied Cybernetics</a><br>
Continuities
Z - Vyzkumny zamer (s odkazem do CEZ)

Publication year
2011
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Article name in the collection
BIOSTEC 2011 4th International Joint Conference on Biomedical Engineering Systems and Technologies
ISBN
978-989-8425-36-2
ISSN
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e-ISSN
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Number of pages
6
Pages from-to
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Publisher name
SciTePress
Place of publication
Lisabon
Event location
Řím
Event date
Jan 26, 2011
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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