GenEx Software library for object detection in genetical analysis evaluation
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985556%3A_____%2F14%3A00438032" target="_blank" >RIV/67985556:_____/14:00438032 - isvavai.cz</a>
Result on the web
<a href="http://zoi.utia.cas.cz/node/805" target="_blank" >http://zoi.utia.cas.cz/node/805</a>
DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
GenEx Software library for object detection in genetical analysis evaluation
Original language description
This package contains GenEx software library for analysis of FISH microscopy image. The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters. It can process arbitrary number of signal channels. Main purpose of the library is to take the input set of 2D images from wide-field fluorescence miscroscope, to detect objects contained in these images, to filter them using either a simple filteror a classifier. Finally, the parameters of the objects are provided in the form of a CSV file for further analysis. Simple graphical editor is included to provide expert input for object classification. The library has been coded in Java on top of theImageJ library and may be used either as an ImageJ plugin or as a Java package. The pilot application for this library has been in a diagnostics system for mosaic form of the Turner syndrom (chromosomal abnormality in which part of the X
Czech name
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Czech description
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Classification
Type
R - Software
CEP classification
JC - Computer hardware and software
OECD FORD branch
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Result continuities
Project
<a href="/en/project/TA01010931" target="_blank" >TA01010931: System for FISH analysis evaluation support</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2014
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Internal product ID
ZOI-soft-0438032
Technical parameters
This package contains GenEx software library for analysis of FISH microscopy image.
Economical parameters
The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters.
Owner IČO
67985556
Owner name
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