Short but Weak: The Z-DNA Lone-Pair center dot center dot center dot pi Conundrum Challenges Standard Carbon Van der Waals Radii

Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081707%3A_____%2F20%3A00537822" target="_blank" >RIV/68081707:_____/20:00537822 - isvavai.cz</a>
Alternative codes found
RIV/61989592:15310/20:73604398
Result on the web
<a href="https://onlinelibrary.wiley.com/doi/10.1002/anie.202004201" target="_blank" >https://onlinelibrary.wiley.com/doi/10.1002/anie.202004201</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1002/anie.202004201" target="_blank" >10.1002/anie.202004201</a>

Result language
angličtina
Original language name
Short but Weak: The Z-DNA Lone-Pair center dot center dot center dot pi Conundrum Challenges Standard Carbon Van der Waals Radii
Original language description
Current interest in lone-pair center dot center dot center dot pi (lp center dot center dot center dot pi) interactions is gaining momentum in biochemistry and (supramolecular) chemistry. However, the physicochemical origin of the exceptionally short (ca. 2.8 angstrom) oxygen-to-nucleobase plane distances observed in prototypical Z-DNA CpG steps remains unclear. High-level quantum mechanical calculations, including SAPT2 + 3 interaction energy decompositions, demonstrate that lp center dot center dot center dot pi contacts do not result from n>pi* orbital overlaps but from weak dispersion and electrostatic interactions combined with stereochemical effects imposed by the locally strained structural context. They also suggest that the carbon van der Waals (vdW) radii, originally derived for sp(3) carbons, should not be used for smaller sp(2) carbons attached to electronwithdrawing groups. Using a more adapted carbon vdW radius results in these lp center dot center dot center dot pi contacts being no longer of the sub-vdW type. These findings challenge the whole lp center dot center dot center dot pi concept that refers to elusive orbital interactions that fail to explain short interatomic contact distances.
Czech name
—
Czech description
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Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
—
OECD FORD branch
10402 - Inorganic and nuclear chemistry

Project
<a href="/en/project/EF15_003%2F0000477" target="_blank" >EF15_003/0000477: Structural gymnastics of nucleic acids: from molecular principles through biological functions to therapeutic targets.</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year
2020
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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