Metabarcoding analysis of strongylid nematode diversity in two sympatric primate species

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081766%3A_____%2F18%3A00489268" target="_blank" >RIV/68081766:_____/18:00489268 - isvavai.cz</a>

Alternative codes found

RIV/60077344:_____/18:00498784 RIV/62157124:16170/18:43876290 RIV/62157124:16810/18:43876290 RIV/00216208:11310/18:10382047

Result on the web

<a href="http://dx.doi.org/10.1038/s41598-018-24126-3" target="_blank" >http://dx.doi.org/10.1038/s41598-018-24126-3</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1038/s41598-018-24126-3" target="_blank" >10.1038/s41598-018-24126-3</a>

Result language

angličtina

Original language name

Metabarcoding analysis of strongylid nematode diversity in two sympatric primate species

Original language description

Strongylid nematodes in large terrestrial herbivores such as great apes, equids, elephants, and humans tend to occur in complex communities. However, identification of all species within strongylid communities using traditional methods based on coproscopy or single nematode amplification and sequencing is virtually impossible. High-throughput sequencing (HTS) technologies provide opportunities to generate large amounts of sequence data and enable analyses of samples containing a mixture of DNA from multiple species/genotypes. We designed and tested an HTS approach for strain-level identification of gastrointestinal strongylids using ITS-2 metabarcoding at the MiSeq Illumina platform in samples from two free-ranging non-human primate species inhabiting the same environment, but differing significantly in their host traits and ecology. Although we observed overlapping of particular haplotypes, overall the studied primate species differed in their strongylid nematode community composition. Using HTS, we revealed hidden diversity in the strongylid nematode communities in non-human primates, more than one haplotype was found in more than 90% of samples and coinfections of more than one putative species occurred in 80% of samples. In conclusion, the HTS approach on strongylid nematodes, preferably using fecal samples, represents a time and cost-efficient way of studying strongylid communities and provides a resolution superior to traditional approaches.

Czech name

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Czech description

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Type

J_imp - Article in a specialist periodical, which is included in the Web of Science database

CEP classification

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OECD FORD branch

40301 - Veterinary science

Project

Result was created during the realization of more than one project. More information in the Projects tab.

Continuities

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Publication year

2018

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Scientific Reports

ISSN

2045-2322

e-ISSN

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Volume of the periodical

8

Issue of the periodical within the volume

1

Country of publishing house

GB - UNITED KINGDOM

Number of pages

11

Pages from-to

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UT code for WoS article

000429785900073

EID of the result in the Scopus database

2-s2.0-85045440671