On Sequence Overlaps Minimizing Post-normalized Edit Distance
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68407700%3A21230%2F18%3A00322804" target="_blank" >RIV/68407700:21230/18:00322804 - isvavai.cz</a>
Result on the web
<a href="http://radio.feld.cvut.cz/conf/poster/proceedings/Poster_2018/Section_IC/IC_055_Rysavy.pdf" target="_blank" >http://radio.feld.cvut.cz/conf/poster/proceedings/Poster_2018/Section_IC/IC_055_Rysavy.pdf</a>
DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
On Sequence Overlaps Minimizing Post-normalized Edit Distance
Original language description
Computational biology deals with processing of genetic sequences. Next-generation sequencing machines produce sets of short substrings of a DNA sequence, called reads, which are further assembled to contigs. Recently there has been proposed a method how to measure the distance between two sequences only from an assembly at the level of contigs. The original paper used a heuristic for finding a suitable overlap of two contigs. The heuristic was, however, not evaluated on its own in the original paper. Here, we address this issue, and our results show, that the relative error of the heuristic is small and that the heuristic provides the exact result in more than two-thirds of the cases.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
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Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2018
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Proceedings of the International Student Scientific Conference Poster – 22/2018
ISBN
978-80-01-06428-3
ISSN
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e-ISSN
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Number of pages
5
Pages from-to
1-5
Publisher name
Czech Technical University in Prague
Place of publication
Praha
Event location
Praha
Event date
May 10, 2018
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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