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The focus on sample quality: Influence of colon tissue collection on reliability of qPCR data

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F86652036%3A_____%2F16%3A00465660" target="_blank" >RIV/86652036:_____/16:00465660 - isvavai.cz</a>

  • Alternative codes found

    RIV/68378041:_____/16:00465660 RIV/00064190:_____/16:N0000162 RIV/00216208:11140/16:10326829 RIV/00216208:11110/16:10326829 and 2 more

  • Result on the web

    <a href="http://dx.doi.org/10.1038/srep29023" target="_blank" >http://dx.doi.org/10.1038/srep29023</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1038/srep29023" target="_blank" >10.1038/srep29023</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    The focus on sample quality: Influence of colon tissue collection on reliability of qPCR data

  • Original language description

    Successful molecular analyses of human solid tissues require intact biological material with well-preserved nucleic acids, proteins, and other cell structures. Pre-analytical handling, comprising of the collection of material at the operating theatre, is among the first critical steps that influence sample quality. The aim of this study was to compare the experimental outcomes obtained from samples collected and stored by the conventional means of snap freezing and by PAXgene Tissue System (Qiagen). These approaches were evaluated by measuring rRNA and mRNA integrity of the samples (RNA Quality Indicator and Differential Amplification Method) and by gene expression profiling. The collection procedures of the biological material were implemented in two hospitals during colon cancer surgery in order to identify the impact of the collection method on the experimental outcome. Our study shows that the pre-analytical sample handling has a significant effect on the quality of RNA and on the variability of qPCR data. PAXgene collection mode proved to be more easily implemented in the operating room and moreover the quality of RNA obtained from human colon tissues by this method is superior to the one obtained by snap freezing.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    EB - Genetics and molecular biology

  • OECD FORD branch

Result continuities

  • Project

    Result was created during the realization of more than one project. More information in the Projects tab.

  • Continuities

    I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Others

  • Publication year

    2016

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Scientific Reports

  • ISSN

    2045-2322

  • e-ISSN

  • Volume of the periodical

    6

  • Issue of the periodical within the volume

    Jul 7 2016

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    10

  • Pages from-to

  • UT code for WoS article

    000379132800001

  • EID of the result in the Scopus database