The focus on sample quality: Influence of colon tissue collection on reliability of qPCR data
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F86652036%3A_____%2F16%3A00465660" target="_blank" >RIV/86652036:_____/16:00465660 - isvavai.cz</a>
Alternative codes found
RIV/68378041:_____/16:00465660 RIV/00064190:_____/16:N0000162 RIV/00216208:11140/16:10326829 RIV/00216208:11110/16:10326829 and 2 more
Result on the web
<a href="http://dx.doi.org/10.1038/srep29023" target="_blank" >http://dx.doi.org/10.1038/srep29023</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1038/srep29023" target="_blank" >10.1038/srep29023</a>
Alternative languages
Result language
angličtina
Original language name
The focus on sample quality: Influence of colon tissue collection on reliability of qPCR data
Original language description
Successful molecular analyses of human solid tissues require intact biological material with well-preserved nucleic acids, proteins, and other cell structures. Pre-analytical handling, comprising of the collection of material at the operating theatre, is among the first critical steps that influence sample quality. The aim of this study was to compare the experimental outcomes obtained from samples collected and stored by the conventional means of snap freezing and by PAXgene Tissue System (Qiagen). These approaches were evaluated by measuring rRNA and mRNA integrity of the samples (RNA Quality Indicator and Differential Amplification Method) and by gene expression profiling. The collection procedures of the biological material were implemented in two hospitals during colon cancer surgery in order to identify the impact of the collection method on the experimental outcome. Our study shows that the pre-analytical sample handling has a significant effect on the quality of RNA and on the variability of qPCR data. PAXgene collection mode proved to be more easily implemented in the operating room and moreover the quality of RNA obtained from human colon tissues by this method is superior to the one obtained by snap freezing.
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
Result was created during the realization of more than one project. More information in the Projects tab.
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2016
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Scientific Reports
ISSN
2045-2322
e-ISSN
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Volume of the periodical
6
Issue of the periodical within the volume
Jul 7 2016
Country of publishing house
GB - UNITED KINGDOM
Number of pages
10
Pages from-to
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UT code for WoS article
000379132800001
EID of the result in the Scopus database
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