Whole-genome sequence of a reassortant G9P [4] rotavirus A strain from two children in the Czech Republic
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00027162%3A_____%2F20%3AN0000010" target="_blank" >RIV/00027162:_____/20:N0000010 - isvavai.cz</a>
Alternative codes found
RIV/61989592:15110/20:73605717
Result on the web
<a href="https://link.springer.com/article/10.1007/s00705-020-04648-w" target="_blank" >https://link.springer.com/article/10.1007/s00705-020-04648-w</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/s00705-020-04648-w" target="_blank" >10.1007/s00705-020-04648-w</a>
Alternative languages
Result language
angličtina
Original language name
Whole-genome sequence of a reassortant G9P [4] rotavirus A strain from two children in the Czech Republic
Original language description
An unusual reassortant rotavirus A (RVA) strain was isolated during RVA surveillance in two previously hospitalized children in 2018. G/P typing revealed uncommon G9P[4] genotypes, so the strains were further characterized by Illumina next-generation sequencing. Whole-genome typing showed that the two strains had a DS-1-like backbone except for NSP2: G9-P[4]-I2-R2-C2-M2-A2-N1-T2-E2-H2. The two strains shared 99.9-100% nucleotide sequence identity in all genes.
Czech name
—
Czech description
—
Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
—
OECD FORD branch
10607 - Virology
Result continuities
Project
<a href="/en/project/NV16-29937A" target="_blank" >NV16-29937A: Detailed analysis of human rotavirus infections in the Czech Republic including atypical and emergent strains: development of new diagnostic methods</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2020
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Archives of Virology
ISSN
0304-8608
e-ISSN
1432-8798
Volume of the periodical
165
Issue of the periodical within the volume
7
Country of publishing house
AT - AUSTRIA
Number of pages
4
Pages from-to
1703-1706
UT code for WoS article
000532654500003
EID of the result in the Scopus database
2-s2.0-85084564697