Evolution of REP diversity: a comparative study
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216208%3A11310%2F13%3A10191456" target="_blank" >RIV/00216208:11310/13:10191456 - isvavai.cz</a>
Alternative codes found
RIV/86652036:_____/13:00394807
Result on the web
<a href="http://dx.doi.org/10.1186/1471-2164-14-385" target="_blank" >http://dx.doi.org/10.1186/1471-2164-14-385</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1186/1471-2164-14-385" target="_blank" >10.1186/1471-2164-14-385</a>
Alternative languages
Result language
angličtina
Original language name
Evolution of REP diversity: a comparative study
Original language description
Repetitive extragenic palindromic elements (REPs) constitute a group of bacterial genomic repeats known for their high abundance and several roles in host cells' physiology. We analyzed the phylogenetic distribution of particular REP classes in genomic sequences of sixty-three bacterial strains belonging to the Pseudomonas fluorescens species complex and ten strains of Stenotrophomonas sp., in order to assess intraspecific REP diversity and to gain insight into long-term REP evolution. Based on proximity to RAYT (REP-associated tyrosine transposase) genes, twenty-two and thirteen unique REP classes were determined in fluorescent pseudomonads and stenotrophomonads, respectively. In stenotrophomonads, REP elements were typically found in tens or a few hundred copies per genome. REPs of fluorescent pseudomonads were generally more numerous, occurring in hundreds or even over a thousand perfect copies of particular REP class per genome. REP sequences showed highly heterogeneous distributio
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
EB - Genetics and molecular biology
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GAP305%2F12%2F1801" target="_blank" >GAP305/12/1801: Molecular mechanisms of association of a novel type of transposase with repetitive palindromic elements</a><br>
Continuities
S - Specificky vyzkum na vysokych skolach<br>I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2013
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
BMC Genomics
ISSN
1471-2164
e-ISSN
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Volume of the periodical
14
Issue of the periodical within the volume
June
Country of publishing house
GB - UNITED KINGDOM
Number of pages
9
Pages from-to
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UT code for WoS article
000320611300001
EID of the result in the Scopus database
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