Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F09%3A00035583" target="_blank" >RIV/00216224:14330/09:00035583 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy
Original language description
This paper describes free software (called Acquiarium, http://cbia.fi.muni.cz/acquiarium.html) for carrying out the common pipeline of many spatial cell studies using fluorescence microscopy. It addresses image capture, raw image correction, image segmentation, the quantification and spatial arrangement of segmented objects, volume rendering, and statistical evaluation. The software is designed for the easy processing of a collection of many 3D images. It can be used for the analysis of a collection of2D images or time lapse series of 2D or 3D images as well. It has a modular design and is extensible via plug-ins. The paper gives an overview of the software and its key design ideas.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
JC - Computer hardware and software
OECD FORD branch
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Result continuities
Project
<a href="/en/project/2B06052" target="_blank" >2B06052: Determination of markers, screening and early diagnostics of cancer diseases using highly automated processing of multidimensional biomedical images</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Others
Publication year
2009
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
IEEE International Symposium on Biomedical Imaging
ISBN
978-1-4244-3932-4
ISSN
1945-7936
e-ISSN
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Number of pages
4
Pages from-to
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Publisher name
IEEE
Place of publication
Boston
Event location
Boston
Event date
Jun 28, 2009
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
000270678400290